OSTF1

Protein-coding gene in the species Homo sapiens
OSTF1
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

1X2K, 1ZLM, 3EHQ, 3EHR

Identifiers
AliasesOSTF1, OSF, SH3P2, bA235O14.1, osteoclast stimulating factor 1
External IDsOMIM: 610180; MGI: 700012; HomoloGene: 8227; GeneCards: OSTF1; OMA:OSTF1 - orthologs
Gene location (Human)
Chromosome 9 (human)
Chr.Chromosome 9 (human)[1]
Chromosome 9 (human)
Genomic location for OSTF1
Genomic location for OSTF1
Band9q21.13Start75,088,514 bp[1]
End75,147,265 bp[1]
Gene location (Mouse)
Chromosome 19 (mouse)
Chr.Chromosome 19 (mouse)[2]
Chromosome 19 (mouse)
Genomic location for OSTF1
Genomic location for OSTF1
Band19 B|19 13.17 cMStart18,493,501 bp[2]
End18,609,187 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • monocyte

  • granulocyte

  • blood

  • right lung

  • skin of abdomen

  • spleen

  • upper lobe of left lung

  • skin of leg

  • gallbladder

  • rectum
Top expressed in
  • granulocyte

  • stroma of bone marrow

  • decidua

  • right kidney

  • gastrula

  • spleen

  • Ileal epithelium

  • lip

  • corneal stroma

  • sciatic nerve
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
  • SH3 domain binding
  • protein binding
Cellular component
  • cytoplasm
  • intracellular anatomical structure
  • secretory granule lumen
  • ficolin-1-rich granule lumen
  • extracellular region
Biological process
  • ossification
  • signal transduction
  • neutrophil degranulation
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

26578

20409

Ensembl

ENSG00000134996

ENSMUSG00000024725

UniProt

Q92882

Q62422

RefSeq (mRNA)

NM_012383

NM_017375

RefSeq (protein)

NP_036515

NP_059071

Location (UCSC)Chr 9: 75.09 – 75.15 MbChr 19: 18.49 – 18.61 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Osteoclast-stimulating factor 1 is a protein that in humans is encoded by the OSTF1 gene.[5][6]


References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000134996 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000024725 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Reddy S, Devlin R, Menaa C, Nishimura R, Choi SJ, Dallas M, Yoneda T, Roodman GD (Apr 1999). "Isolation and characterization of a cDNA clone encoding a novel peptide (OSF) that enhances osteoclast formation and bone resorption". J Cell Physiol. 177 (4): 636–45. doi:10.1002/(SICI)1097-4652(199812)177:4<636::AID-JCP14>3.0.CO;2-H. PMID 10092216. S2CID 34911988.
  6. ^ "Entrez Gene: OSTF1 osteoclast stimulating factor 1".

Further reading

  • Maruyama K, Sugano S (1994). "Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides". Gene. 138 (1–2): 171–4. doi:10.1016/0378-1119(94)90802-8. PMID 8125298.
  • Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, et al. (1997). "Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library". Gene. 200 (1–2): 149–56. doi:10.1016/S0378-1119(97)00411-3. PMID 9373149.
  • Sparks AB, Hoffman NG, McConnell SJ, et al. (1998). "Cloning of ligand targets: systematic isolation of SH3 domain-containing proteins". Nat. Biotechnol. 14 (6): 741–4. doi:10.1038/nbt0696-741. PMID 9630982. S2CID 11166026.
  • Schaub R, Dupont B, Roodman GD, et al. (2000). "Assignment of OSTF1 to human chromosome bands 12q24.1→q24.2 by in situ hybridization". Cytogenet. Cell Genet. 88 (1–2): 87–8. doi:10.1159/000015492. PMID 10773673. S2CID 41580372.
  • Kurihara N, Menaa C, Maeda H, et al. (2001). "Osteoclast-stimulating factor interacts with the spinal muscular atrophy gene product to stimulate osteoclast formation". J. Biol. Chem. 276 (44): 41035–9. doi:10.1074/jbc.M100233200. PMID 11551898.
  • Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
  • Szymkiewicz I, Destaing O, Jurdic P, Dikic I (2004). "SH3P2 in complex with Cbl and Src". FEBS Lett. 565 (1–3): 33–8. doi:10.1016/j.febslet.2004.03.100. PMID 15135048. S2CID 22127534.
  • Humphray SJ, Oliver K, Hunt AR, et al. (2004). "DNA sequence and analysis of human chromosome 9". Nature. 429 (6990): 369–74. Bibcode:2004Natur.429..369H. doi:10.1038/nature02465. PMC 2734081. PMID 15164053.
  • Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
  • Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. Bibcode:2005Natur.437.1173R. doi:10.1038/nature04209. PMID 16189514. S2CID 4427026.
  • Li M, Meng Z, Xu Y, et al. (2006). "Crystallization and preliminary X-ray crystallographic analysis of osteoclast-stimulating factor". Acta Crystallographica Section F. 61 (Pt 1): 128–30. doi:10.1107/S1744309104031653. PMC 1952375. PMID 16508112.
  • Chen L, Wang Y, Wells D, et al. (2006). "Structure of the SH3 domain of human osteoclast-stimulating factor at atomic resolution". Acta Crystallographica Section F. 62 (Pt 9): 844–8. doi:10.1107/S1744309106030004. PMC 2242886. PMID 16946461.
  • Olsen JV, Blagoev B, Gnad F, et al. (2006). "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks". Cell. 127 (3): 635–48. doi:10.1016/j.cell.2006.09.026. PMID 17081983. S2CID 7827573.
  • Ewing RM, Chu P, Elisma F, et al. (2007). "Large-scale mapping of human protein–protein interactions by mass spectrometry". Mol. Syst. Biol. 3 (1): 89. doi:10.1038/msb4100134. PMC 1847948. PMID 17353931.
  • v
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  • 1x2k: Solution Structure of the SH3 Domain of Human osteoclast stimulating factor 1 (OSTF1)
    1x2k: Solution Structure of the SH3 Domain of Human osteoclast stimulating factor 1 (OSTF1)
  • 1zlm: Crystal structure of the SH3 domain of human osteoclast stimulating factor
    1zlm: Crystal structure of the SH3 domain of human osteoclast stimulating factor


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